How the Microbiome Controls Your Health

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Posted in: Probiotics, Immunity

Scientific Sources

What is the microbiome and why is it important for health?

The microbiome refers to trillions of microorganisms (bacteria, fungi, viruses) living in and on the body, particularly in the gut. These microbes outnumber human cells and contain 100 times more genes than human genome. The microbiome influences digestion and nutrient absorption, immune system development and function, metabolism and weight regulation, brain function and mood (gut-brain axis), protection against pathogens, and production of vitamins and beneficial compounds. Microbiome composition significantly impacts overall health and disease risk.

What is the difference between eubiosis and dysbiosis?

Eubiosis represents healthy, balanced microbiome with diverse beneficial bacteria supporting optimal function. Dysbiosis is microbial imbalance characterized by reduced diversity, overgrowth of harmful bacteria, and loss of beneficial species. Dysbiosis associates with numerous conditions including inflammatory bowel disease, obesity, metabolic syndrome, allergies, autoimmune diseases, mood disorders, and cardiovascular disease. Restoring eubiosis through diet, probiotics, and lifestyle is therapeutic goal.

How does the gut microbiome affect immune function?

Approximately 70-80% of immune system resides in gut-associated lymphoid tissue (GALT). Gut microbiome educates and regulates immune system, teaching it to distinguish harmful from harmless antigens. Beneficial bacteria produce short-chain fatty acids and other compounds that support immune cell function, maintain gut barrier integrity preventing pathogen entry, compete with harmful bacteria limiting colonization, and modulate inflammatory responses. Dysbiosis contributes to allergies, autoimmunity, and chronic inflammation.

Can gut dysbiosis affect cardiovascular and metabolic health?

Yes, research shows gut microbiome dysbiosis links to cardiovascular disease through multiple mechanisms including increased gut permeability allowing inflammatory compounds into bloodstream, production of TMAO (trimethylamine N-oxide) from certain foods promoting atherosclerosis, chronic low-grade inflammation affecting vascular health, and altered metabolism affecting blood pressure and lipids. Dysbiosis also associates with obesity, insulin resistance, type 2 diabetes, and metabolic syndrome. Gut health is truly connected to heart health.

How can you improve gut microbiome health?

Microbiome optimization strategies include eating diverse fiber-rich plant foods feeding beneficial bacteria, consuming fermented foods (yogurt, kefir, sauerkraut, kimchi) providing probiotics, taking probiotic supplements with evidence-based strains, consuming prebiotic fibers (inulin, FOS) feeding beneficial bacteria, limiting processed foods, sugar, and artificial sweeteners, avoiding unnecessary antibiotics, managing stress (affects gut-brain axis), getting adequate sleep, and regular exercise. Comprehensive dietary and lifestyle approach provides best results for restoring eubiosis.

  • Gut microbiome contains trillions of microbes with 100x more genes than human genome influencing multiple health aspects
  • 70-80% of immune system resides in gut - microbiome critically important for immune development and function
  • Eubiosis (balanced microbiome) supports health while dysbiosis (imbalance) associates with numerous diseases
  • Gut microbiome affects cardiovascular health through inflammation, TMAO production, and metabolic pathways
  • Dysbiosis links to obesity, diabetes, IBD, allergies, autoimmunity, and neurological conditions
  • Beneficial bacteria produce vitamins and short-chain fatty acids supporting health
  • Gut-brain axis means microbiome influences mood, behavior, and mental health
  • Microbiome health is modifiable through diet, probiotics, and lifestyle offering therapeutic opportunities
  1. Diverse plant foods: Eat 30+ different plant foods weekly providing varied fibers for microbiome diversity
  2. Fermented foods daily: Include yogurt, kefir, sauerkraut, kimchi, or kombucha providing natural probiotics
  3. Prebiotic fibers: Consume foods rich in inulin and FOS (onions, garlic, asparagus, bananas, oats)
  4. Probiotic supplementation: Take 10-50 billion CFU daily of multi-strain formula with Lactobacillus and Bifidobacterium
  5. Limit processed foods: Reduce sugar, refined carbs, and artificial additives disrupting microbiome
  6. Avoid unnecessary antibiotics: Use only when medically necessary; take probiotics during and after antibiotic courses
  7. Manage stress: Chronic stress alters gut microbiome through gut-brain axis; practice stress reduction
  8. Prioritize sleep: Poor sleep disrupts microbiome; aim for 7-9 hours nightly
  9. Regular exercise: Physical activity enhances microbiome diversity and beneficial bacteria
  10. Polyphenol-rich foods: Berries, dark chocolate, green tea, red wine (moderate) support beneficial bacteria
  11. Consider testing: Comprehensive stool testing can identify specific dysbiosis patterns guiding targeted interventions
  • People with digestive issues including IBS, IBD, or chronic gut symptoms
  • Individuals with weakened immunity or frequent infections
  • Those with metabolic syndrome, obesity, or diabetes - dysbiosis common in these conditions
  • People with cardiovascular disease or risk factors
  • Individuals with allergies or autoimmune conditions linked to dysbiosis
  • Those with mood disorders (anxiety, depression) potentially related to gut-brain axis
  • People who have taken antibiotics disrupting microbiome
  • Anyone wanting to optimize health through microbiome support
  • People with severe immunocompromise - live probiotics may pose infection risk; requires medical supervision
  • Those with central venous catheters or serious underlying conditions - probiotic sepsis risk though rare
  • Individuals with SIBO (small intestinal bacterial overgrowth) - some probiotics may worsen; requires specific treatment
  • People with histamine intolerance - certain probiotic strains may increase histamine
  • Those allergic to dairy or yeast - avoid probiotics cultured on these substrates
  • Premature infants - probiotic use requires neonatologist guidance

Results: Primer for clinicians reviews role of microbiome in human health and disease. Research shows gut microbiome influences immunity, metabolism, and numerous disease states.

Citation: Khanna S, Tosh PK. Mayo Clin Proc. 2014 [Clinician's primer on microbiome role in health and disease]

Results: Research demonstrates allergy has important relationship with gastrointestinal system. Gut microbiome composition affects immune system development and allergic disease risk.

Citation: Vighi G, et al. Clin Exp Immunol. 2008;153(Suppl 1):3-6

Results: Review examines eubiosis and dysbiosis as two sides of microbiota. Balanced microbiome supports health while imbalance contributes to disease across multiple organ systems.

Citation: Iebba V, et al. New Microbiol. 2016;39(1) [Eubiosis and dysbiosis: two sides of microbiota]

Results: Research shows gut microbiota dysbiosis affects cardiovascular health. Studies demonstrate microbiome links to atherosclerosis, hypertension, and heart disease through inflammatory and metabolic pathways.

Citation: Serino M, et al. [Dysbiosis of gut microbiota and cardiovascular disease]